SE3520733

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6951
  • Mimulus guttatus
  • SE3520733
  • Mutator
  • M34
  • scaffold_6:3381163-3381898
  • TTTAATTTA
  • AGGGTTAAATACAAAAACACCCATGTACTATGAACTTTGTATCATTTACCCCCCTGTACTACACATAAATACAAAAACCCCCCTCACATTGCATTTTTTTCCAAAATATGACGAAAATATCCCTACT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAATTT               A      A         A                  C                                C  -    CAT             A             C  A  CAATATATATATG      -  CATTTTCCACTATATATTTTATCATTTTCAGTCAATTTTACGTTGAAAATTTTAGTATTTATACTTTTTTCTCCAAAACATCTAATTGCTTACATTTTTTTATTTTCTAAATAAAACTTTTTATTTTTGTCATTTTGAGTTTCTTCATTTTTTTTTCTTAAATGTCTTCCGGTAGTTCAAACATCCTAAGATTACAAAAATCTTTACAATCCTATTAT
        AGGGTTAAATACAAA ACACCC TGTACTATG ACTTTGTATCATTTACCC CCTGTACTACACATAAATACAAAAACCCCCCT AC ATTG   TTTTTTCCAAAAT TGACGAAAATATC CT CT             GTTTGA GC                                                                                                                                                                                                                          
        ||||||||||||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||   ||||||||||||| ||||||||||||| || ||             |||||| ||                                                                                                                                                                                                                          T
        TCCCAATTTATGTTT TGTGGG ACATGATAC TGAAACATAGTAAATGGG GGACATGATGTGTATTTATGTTTTTGGGGGGA TG TAAT   AAAAAAGGTTTTA ACTGCTTTTATGG GA GA             TTTGGA AT                                                                                                                                                                                                                          
ATTTAATT               A      G         C                  A                                -  A    -AT             G             T  C  -------------      T  TTATATTTCCAAACAAACTCGGTAAAAGGTGATATAAAAAATTGTAAAAGCCAGTTAAAATGAACTCTTTAAAAATAAAAAAATAAAAAAGGAAGTTTTGTAAATTAATGAATCTAAAGAAAAATTTAAAAGACTTATTTTTGGAAAATAAAAACAATAAAACTTAAAGAAGTAAAAAAAGAATTTGCAGAAGGCCATCAATGCAAGTTTAAGAGTTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End