SE3520734

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6952
  • Mimulus guttatus
  • SE3520734
  • Mutator
  • M19
  • scaffold_2522:912-1675
  • TTTTAATAT
  • GGCTTAATCCCACTTTGCACCCTTGAAGTATGGCATTTTAGCACATTGCACCCATGAAACAAAGTAATAGCATTTGGCACCCTCGAAACACAATAAACATTCACAATGCACCCTGAATTGAATATTGAATACTTAATGAGGGTAATTTAATTTTTTATTGTTTTTTTCCAGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TTTTAATATT        C     T                   A    A    A        A     CAA   A         G              C      -   T  C        C     T  -ATA     TAC                   -      ---T         CCA   ----    ---   -   AAATTAAATTATTATTTCCTTCCACCCCAACATAATTTCGAGCATACGAAATCCGAAAAAACAAAAATGACGAAGAATTACTCAAAAAACTATATTTTCTTAAAAAAAAACAAAAAAACAAAAACAAAATTCACTAAATTATTCGATTGTTGGATTTGTATATTGTAGCTAGTGAAAATATTTAG
          GGCTTAAT CCACT TGCACCCTTGAAGTATGGC TTTT GCAC TTGCACCC TGAAA   AGT ATAGCATTT GCACCCTCGAAACA AATAAA CAT CA AATGCACC TGAAT GA    TTGAA   TTAATGAGGGTAATTTAAT TTTTTA    TGTTTTTTT   GGA    TGCA   AAT AAC                                                                                                                                                                                         
          |||||||| ||||| ||||||||||||||||||| |||| |||| |||||||| |||||   ||| ||||||||| |||||||||||||| |||||| ||| || |||||||| ||||| ||    |||||   ||||||||||||||||||| ||||||    |||||||||   |||    ||||   ||| |||                                                                                                                                                                                          
          CCGAATTA GGTGA ACGTGGGGACTTTATGTCG AAAA TGTG AACGTGGG GCTTT   TTA TATCGTGAA CGTGGGAGCTTTGT TTATTT GTA GT TTACGTGG ACTTA CT    AATTT   GATTACTTCCATTAAATTA AAAAAT    ATAAAAAAA   CCT    TTAC   TTA TTA                                                                                                                                                                                         
TTATAATTTT        A     T                   G    C    A        A     TTA   A         A              A      A   C  A        T     -  AAAA     --C                   T      CACC         ---   CAAA    AGT   G   AAAAAAAATAAGTAGTTAGTAAAGATTTAATATTTCACGTTTTTATTTTTGTATCAATTGGTTGTATAATTTAATAATAAAAAAAGTGTTTCTTTATAAATGGTTTTTTATTTCTTGTTTTTTATAGGAAGTCGATAAATACACAGTTTCATAAACATTTAATATAAAAGAAGGTTTATAAACAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End