SE3550735

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6953
  • Mimulus guttatus
  • SE3550735
  • PIF/harbinger
  • To1
  • scaffold_8:15139793-15140076
  • TTA
  • AGGTGGTGTTTGCAAAAGCTTATTTAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                     AT       -   AAGTTGGTGATTGTGAGTTAAGTTGATATTAAATGCTTAATTCTAAAAGTTGGGGGTGTTTGCAAAAAATCTGGAAAATAACTAAAATAGAAAAAGTAGGTACATGG
  AGGTGGTGTTTGCAAAAGCTT  TTAAAAG CAT                                                                                                           
  |||||||||||||||||||||  ||||||| |||                                                                                                           G
  TCCACCACAAACGTTTTCGAA  AATTTTT TCT                                                                                                           
AT                     --       A   AATACTCGAAAAAAAAGAGTGTATTAGACAAAAATCCACAAACGTTTTAGCTAAAAACGAAAACCAAGAGAATTTTATTCGACAAAATTCGATATTAAAATTTTCGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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