SE3520736

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6954
  • Mimulus guttatus
  • SE3520736
  • Mutator
  • M15
  • scaffold_15:792144-792527
  • TAATTCTTA
  • TTAGGGTAAATAAAACTTAACCCCCTGTGGTTACAAACTTTTGCAGATAACCCTCTTGTGCTCGTAATATCAGTACATA

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTC            AA C      -              A --T         A  C           G      C        ACCC                                    --  -    AGCT      CC          G    AATATT  T        TGACTCCCTTGTACTT
      TTAGGGTAAATA  A TTAACC CCCTGTGGTTACAA C   TTTGCAGAT AC CTCTTGTGCTC TAATAT AGTACATA    CTTTGTGGTTTATGGGGTAGCTTCCGTTAGTTTTTT  TC GACA    TAATCG  TGTGTCAAAC TTAA      TT TTTGCAAA                
      ||||||||||||  | |||||| |||||||||||||| |   ||||||||| || ||||||||||| |||||| ||||||||    ||||||||||||||||||||||||||||||||||||  || ||||    ||||||  |||||||||| ||||      || ||||||||                T
      AATCCCATTTAT  T AATTGG GGGACACCAATGTT G   AAACGTCTA TG GAGAACACGAG ATTATA TCGTGTAT    GGAACGCCAAATACCCCATCGAAGGCAATTAAAAAG  AG CTGT    ATTGGC  ACACAGTTTG AGTT      AG AGACGTTT                
ATTCTT            CG A      A              C CAC         C  A           A      C        CAAA                                    GC  A    ----      AT          A    -ACCCT  T        TTATTTTTCCTTTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End