Plant MITE

SE3530738

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6956
Mimulus guttatus
SE3530738
hAT
Hat9
scaffold_13:18967848-18968484
CTTGTGAA
CAGGGCCGGTTCTGAGG

Secondary structure and sequence

TSD TIR

5'

3'

CTTGTGAA        G        -----  A   GAAG  -  ----- GGTCGCCTAGGGCCCCGATTTTTTACGAAAATTGAGGGCCCCCAAATTATTTTATATACACTTTATATATTAGTATTTATTTTTAAAAATTTATTATATGTAATATTTTGGAACATCAATTCTAAAATAAATTTAAACTAAATGATCAATAGATATTTTTGCAATTTTCATAACTTTGGGGGCCCCTAAATATTAAATTTATGATGTCTTAATTACTTATTTTATTCTAAAATAAGAATCAATATTCATTAGTGTATTCAAGTTTATAAATATTT
        CAGGGCCG TTCTGAGG     GG GGC    TA GG     C                                                                                                                                                                                                                                                                                   
        |||||||| ||||||||     || |||    || ||     |                                                                                                                                                                                                                                                                                   A
        GTCCCGGC AGGACTCT     CC CCG    GG TA     T                                                                                                                                                                                                                                                                                   
AAGTGTTC        A        TAAAC  -   ----  A  CGCTC AAATTTCTTTTTGACTTTTGCCCCGGGGATAAACTATTTTGATAAAAAAATAATTTTCCACAATTTTTAACTTACACGATTTTTTTATATTTATTATAAAAGATTTTTACTACTTTATTTTCTAATACCCCAAGCCCCCGTCACGGGGGCTTTATAAAAAACTTTACATACTTATATTTTATTGATTTTTATACCTTTTTTTAAAGTTTTATTTGTTATACTAAACGACCAAGTGAAGGAGGGCACTGCATATTGAAATATAGTTTATCTGAAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530738

CTTGTGAACAGGGCCGGTTCTGAGGGGAGGCGAAGTAGGCGGTCGCCTAGGGCCCCGATTTTTTACGAAAATTGAGGGCCCCCAAATTATTTTATATACACTTTATATATTAGTATTTATTTTTAAAAATTTATTATATGTAATATTTTGGAACATCAATTCTAAAATAAATTTAAACTAAATGATCAATAGATATTTTTGCAATTTTCATAACTTTGGGGGCCCCTAAATATTAAATTTATGATGTCTTAATTACTTATTTTATTCTAAAATAAGAATCAATATTCATTAGTGTATTCAAGTTTATAAATATTTATGAAGTCTATTTGATATAAAGTTATACGTCACGGGAGGAAGTGAACCAGCAAATCATATTGTTTATTTTGAAATTTTTTTCCATATTTTTAGTTATTTTATATTCATACATTTCAAAAAATATTTCGGGGGCACTGCCCCCGAACCCCATAATCTTTTATTTCATCATTTTTAGAAAATATTATTTATATTTTTTTAGCACATTCAATTTTTAACACCTTTTAATAAAAAAATAGTTTTATCAAATAGGGGCCCCGTTTTCAGTTTTTCTTTAAATCTCGCATAGGGCCCCCAAATTCTCAGGAACGGCCCTGCTTGTGAA

Copy Cancel