SE3520743

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6961
  • Mimulus guttatus
  • SE3520743
  • Mutator
  • M18
  • scaffold_12:6393721-6394135
  • TAAAATTAA
  • AGGACAAAATGCACTTTGCCCTCTATAAATTTCTGTTTTTAACACTTTCCCCCCCAAAAATTAAAAAGATGGATATTCCCCCTTCAAAATATTATATTGATTGCACTTTGCCCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAAATTA   AC   A     T                    T    AA      C     CA      --A     A     AT                   -A   A      -   G    ---ATAAG   ATTTGTGGAGGGCATTGTGCAACAAAAATAATATTTTAAAGGGGCAATGTGCAAAAAAGTAATGTTTTTAAGGGG
        AGG  AAA TGCAC TTGCCCTCTATAAATTTCTG TTTT  CACTTT CCCCC  AAAATT   AAAAG TGGAT  TCCCCCTTCAAAATATTAT  TTG TTGCAC TTT CCCC        CCA                                                                           
        |||  ||| ||||| |||||||||||||||||||| ||||  |||||| |||||  ||||||   ||||| |||||  |||||||||||||||||||  ||| |||||| ||| ||||        |||                                                                           C
        TCC  TTT ACGTG AGTGGGGGATATTTAAAGAT AAAA  GTGAAA GGGGG  TTTTAA   TTTTC ACTTA  AGGGGGAGGTTTTATAATA  AAC AACGTG AAA GGGG        TTA                                                                           
AATTAAAA   CT   A     T                    T    GC      T     AG      AAC     -     -C                   AG   -      T   G    CTATCGTT   AGGCTACCTAATAAGTAGCCTTAACTCCTAAAAAAAACGTGCAATGGGGAAATTTACAATAAAAATAACGTTCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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