SE3540748

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6966
  • Mimulus guttatus
  • SE3540748
  • CACTA
  • Ca1
  • scaffold_13:5273281-5273574
  • TGT
  • CACTAGTAGAAAAATGGCTTTTTACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGT             ATG    T     ------   A              ---  AA     CAAATTCGTACTAAAAAGGCTTTTGCTACGCATTTGCTACGAATTTGCCCCGTAGCATATACGGGCGTGACAAAAGCTTTGCTACGGT
   CACTAGTAGAAAA   GCTT TTACT      ACG TCATTAATCGTAGC   AA  GGTAT                                                                                        
   |||||||||||||   |||| |||||      ||| ||||||||||||||   ||  |||||                                                                                         
   GTGATCATCTTTT   CGAA AATGA      AAA AAACGATGCCATTT   GG  CATTA                                                                                        
TGT             AAA    T     TACTTT   -              TTT  --     TTTTCCATAAAAAATGATGCCTTGTTAAAACTTCAGTATCATTTATGATCCTAAATGGCATCGTTTTTTTATAAACCATGCCGGTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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