SE3530749

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6967
  • Mimulus guttatus
  • SE3530749
  • hAT
  • Hat7
  • scaffold_11:5653634-5654126
  • CATTATAC
  • TAGGGGTGTAAACGAGCCGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CATTATAC         A            --  A TCGTGAGCTCGACGAGCCGGCTCGTAAAAAGCTCGAACTCGGACTCGAGATTTTCGAGCTCGAGCTTTCTGACGAGCCGAGCTCGAGCCGGTTTTCAGTTGTTCATGAGCTCGCGAGCCGGATTTATTATTATTTTTCATGTTTTATATGTTATTTTTATTTAAATAATGTATAATAATATAAAATATTATATAATACAAATATTAAAAATA
        TAGGGGTGT AACGAGCCGAGC  CG C                                                                                                                                                                                                                    
        ||||||||| ||||||||||||  || |                                                                                                                                                                                                                     
        ATCCCCACA TTGCTCGGCTCG  CG G                                                                                                                                                                                                                    
CATATTAC         C            AG  - AGAAAACCGACCGAGCTCGAGCTCGAGCTCAAATAAAACAGCTCGAGCTCGAGCAGCTCAAGGAGAAAAAAACCGAGCTCGAGCTCGAGCACAGTTAAAACAGCTCGAGCTCGGGAAACAGAAAAAAAAAAAAATTATAAAAAAATTAATAATAAAATAATAATTTTTAATAAATTTTTTTATTTTTTATTTTTGATTTAACATTAATATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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