SE2620001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6969
  • Oryza sativa
  • SE2620001
  • Mutator
  • M1
  • Chr12:24198563-24199067
  • AATTTTTTT
  • AATTTTTTTCATTTTTCAATTTTTTTCTTTTAATATTTACAGAAATAATCCATCGGCGCAAAAAATTACAAAAATAGACCCTGCCGCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
                CAA                               C                 C                     CTACT                      A    G  AGG     -  G  GACG  AGA  GGAGA   AG   TT         C  - AACCCTTGCCGCGGCAAGGGGCCTTCATGCAAAAAAGCCAGCCCAGGCCTAGTACTTTTTGGCTGGTACTTTTTGCATC
AATTTTTTTCATTTTT   TTTTTTTCTTTTAATATTTACAGAAATAATC ATCGGCGCAAAAAATTA AAAAATAGACCCTGCCGCCCT     AGGGCGGCAAGCTGACGTGGCA ACGG GG   GACGG GC GT    GC   CG     GGG  GGT  TTTTTTGCA GA A                                                                               
||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||| |||| ||   ||||| || ||    ||   ||     |||  |||  ||||||||| || |                                                                                
TTAAAAAAAGTAAAAA   AAAAAAAGAAAATTATAAATGTCTTTATTAG TAGCCGCGTTTTTTAAT TTTTTATCTGGGACGGTGGGA     TCCCGCCGTTCGACTGCACCGT TGCC CC   CTGCC CG CA    CG   GC     TGC  TTT  TAACGTAAA TC G                                                                               
                TTA                               A                 A                     TCACC                      C    G  GAG     G  G  --GA  GCA  --AGA   --   --         -  G GGAAACGGCGGATTTACGTTAAAAGCGCCGGGATTTCTCGTAAACCGACCATGAAAAATGTAGCCGCCGTTCCCTGGGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End