SE2620002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6970
  • Oryza sativa
  • SE2620002
  • Mutator
  • M1
  • Chr02:31988152-31988698
  • AATTTTTTT
  • AATTTTTTTCATTTTTAATTTTTTTCTTTTAATATTTACAGAAATAATCCATCGGCGCAAAAAATTACAAAAATAGACCCCTGCCGCCCT

Secondary structure and sequence

TSD    TIR
5'



3'
     T                                           C  C                           C      C  CCACT                      A    G  ---   GA    - GGTGACGGCAGACGGGAGAGGGAGGGTTTTTTTTGCACGAAAACCCTTGCCGCCCTCTGGCCCCCATGCAAAAAAGCCAGCCCGAGCCTAGTACTTTTTGGCTGGTACTTTTTACATCTGGGTCCCTTGCCGCCCTCT
AATTT TTTCATTTTTAATTTTTTTCTTTTAATATTTACAGAAATAATC AT GGCGCAAAAAATTACAAAAATAGACCC TGCCGC CT     AGGGCGGCAAGCTGACGTGGCA ACGG GG   AGG  CGGG C                                                                                                                                          
||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||| ||     |||||||||||||||||||||| |||| ||   |||  |||| |                                                                                                                                           
TTAAA AAAGTAAAAATTAAAAAAAGAAAATTATAAATGTCTTTATTAG TA CCGTGTTTTTTAATGTTTTTATCTGGG ACGGCG GA     TCCCGCCGTTCGATTGCACCGT TGCC CC   CTG  CCGC G                                                                                                                                          
     T                                           A  A                           -      A  TTACC                      C    G  GAG   --    G CAGACGGCGGCAGACGCTTTTAACGTAAATCGGGGAACGGCGAGAGACATTCCCGCCGTTCCCCGATTTACGTTAAAAGTGTCGGGATTTCTCGTAAACCGACCATGAAAAACGTAGATCCGGGGAACGGCAGAATAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End