SE2620003

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6971
  • Oryza sativa
  • SE2620003
  • Mutator
  • M1
  • Chr12:23398831-23399388
  • GAATTTTTT
  • TTTTTTCGGTTTTAGATTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3'
  GAA        GT             AAAAA                          C         A         A C         ACCTCTG   C                 AAAAGGAACG        --    -   - GGGTTTTTTTTGCAGGAAAACCCTTGCCGCCCTCTGGTGGGGCGGCAAGGGGCCCGAATGCAAAAAAGCCAGTCGGGGCCAGTCATTTTGCAGGCGGCCCCTTGCCGCCCTCTGGCCGGGCGGCAAGCCTCGCTGCCTAT
     TTTTTTCG  TTTAGATTTTTTT     AATATTTACAGAAATAATCTATCGGC AAAAAAATT CAAAAATAG C CTGCCGCCC       GGG GGCAAGCTGACGTGGCA          GGCGGTGA  CGGA GGG A                                                                                                                                            
     ||||||||  |||||||||||||     |||||||||||||||||||||||||| ||||||||| ||||||||| | |||||||||       ||| |||||||||||||||||          ||||||||  |||| ||| |                                                                                                                                            A
     AAAAAAGC  AAATCTAAAAAAA     TTATAAATGTCTTTATTAGATAGCTG TTTTTTTAA GTTTTTATC G GACGGCGGG       CCC CCGTTCGACTGCACCGT          CTGCCACT  GCTG CGC G                                                                                                                                            
CTTAA        AA             ----A                          -         C         A A         GTTACCA   A                 ----------        CA    G   G CAGACGGCGGCAGCCGGTTTTAACGCAGACTTAGACCGTCCCAAAGCGGGGAAGAAGAGAAGAGGAGGGGAGAGAAGGAAAAAAAAAGTGACCTTAACTCCTCCCTCCTTACTCCCGACCCCCGATCCGCCGTCCGGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End