SE2620004

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6972
  • Oryza sativa
  • SE2620004
  • Mutator
  • M1
  • Chr12:2125855-2126321
  • TTTTTTCAT
  • TTTTTCATTTTTAAATTTATTTTTTTAATATTTACAGAAATATTATATCGGCAAAAAGATTTACAAAAATAGACCCTACCGCCCTCTATTTGCGCGGCAAGCTGACGTGGCACATGGACACATGAC

Secondary structure and sequence

TSD    TIR
5'



3'
T                                                    AA                A    CTA              C                        ACA      AGTC    TGGGAAGCTATGAATTTTGCACGTGGCCCCCTTGCCGCCCTCTGTCTAGGCGGCAAGGGGCCACCGTGCAAAATTCGTAAGGGCAACAAGGGGCTCAG
 TTTTTCATTTTTAAATTTATTTTTTTAATATTTACAGAAATATTATATCGGC  AAAGATTTACAAAAAT GACC   CCGCCCTCTATTTG GCGGCAAGCTGACGTGGCACATGG   CATGAC    GTTT                                                                                                  
 ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||   |||||||||||||| ||||||||||||||||||||||||   ||||||    ||||                                                                                                  A
 AAAAAGTAAAAATTTAAATAAAAAAATTATAAATGTCTTTATAATATAGTCG  TTTCTAAATGTTTTTA CTGG   GGCGGGAGGTAAAC CGCCGTTCGACTGCACCGTGTGCC   GTACTG    CGCG                                                                                                  
A                                                    CC                C    AAC              C                        GCA      AACA    TAAAATGCGATTCGGGGAACGTCGAGAGACATTCCCGCCGTTCCCCGATTTACACTAAAACCGGGACGGTTTTTTCGTTAACCGATCAAGAAAAACGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End