SE2620005

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6973
  • Oryza sativa
  • SE2620005
  • Mutator
  • M2
  • Chr06:10824119-10824441
  • AATTTTTTT
  • AATTTTTTTCATATTTACATTTTTATTTTTTAATATTTACAGAAATATTATACCG

Secondary structure and sequence

TSD    TIR
5'



3' 
            A    C                       G             GCGAC             --     ------A  GGCGGCAGGGTGACGTGAGGGATGGACAAGGTGAAAAAAACACTAAAAAATACATTTTTGGCCAGGTGAAAATTAC
AATTTTTTTCAT TTTA ATTTTTATTTTTTAATATTTACA AAATATTATACCG     AATATTTACAAAA  GTCCC       AG                                                                            
|||||||||||| |||| ||||||||||||||||||||||| |||||||||||||     |||||||||||||  |||||       ||                                                                            A
TTAAAAAAAGTA AAAT TAAAAATAAAAAATTATAAATGT TTTATAATATGGT     TTATAAATGTTTT  CAGGG       GG                                                                            
            A    T                       A             AGATT             TA     GACGGCG  TTCACCTCCCGCCGTTCCACACGCGTAAAACGTGACTCCAGGGAACGGCGAGAGACATTCCCGACCTCCCCCATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3