Plant MITE

SE2620006

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6974
Oryza sativa
SE2620006
Mutator
M2
Chr02:22326507-22326840
GAATTTTTT
GAATTTTTTTCATTTTAAAATTTTTATTTTTTAATATTTACAAAAATATTATACCATCCAAAATATTTACAGAAATGGCC

Secondary structure and sequence

TSD TIR

5'

3'

           -     A        AT             CAA       A    AT C     A         -ATG   TCTGTC    AA  GAAGGACGGCAAGGTGTGCGCATTTTGCACTGAGGTCCCTTGCCGTCCTCTGCAAGGGCTGTAAAGGGGCAAATGC
GAATTTTTTTC ATTTT AAATTTTT  TTTTTAATATTTA   AAATATT TACC  C AAAAT TTTACAGAA    GCC      GCCC  GT                                                                            
||||||||||| ||||| ||||||||  |||||||||||||   ||||||| ||||  | ||||| |||||||||    |||      ||||  ||                                                                             
CTTAAAAAAAG TAAAA TTTAAAAA  AAAAATTATAAAT   TTTATAA ATGG  G TTTTA AAATGTTTT    TGG      GACG  GC                                                                            
           G     A        AT             ATC       C    CC C     A         CATA   ------    --  TCCCGCCGTCACACTGTACTCCCTGCTTGTTCTATTTTTTTTGGATCTTTTTACGTAGAAACCATCCCGCTTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2620006

GAATTTTTTTCATTTTAAAATTTTTATTTTTTAATATTTACAAAAATATTATACCATCCAAAATATTTACAGAAATGGCCTCTGTCGCCCAAGTGAAGGACGGCAAGGTGTGCGCATTTTGCACTGAGGTCCCTTGCCGTCCTCTGCAAGGGCTGTAAAGGGGCAAATGCAATTTTCGCCCTACCAAAGATGCATTTTTCTAGGTTTTTTTTATCTTGTTCGTCCCTCATGTCACACTGCCGCCCTCGGCAGGGTATACTTTTGTAAAAATTTTCGCCGGTACAATATTTCTATAAATATTAAAAATAAAAAATTTAAAAATGGAAAAAAATTC

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