SE2620007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6975
  • Oryza sativa
  • SE2620007
  • Mutator
  • M3
  • Chr05:2321093-2321775
  • AATTTTTTT
  • AATTTTTTTTATTTATACTTTTTTTTATTAAAATATTTACAAAAATAATTTTTTGTTTCGAAAATTTACAAATCTAATTGCCTGCCGCCCTTAAGAAGGGCGATTTTTAAAAATCGCCCTCTCAAAGGGCGGCAAGGGACCTAAATACAAAATTTTTATTTGTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                                                                                             A                          C   A                     ACA        -------      --         CTTCCCACCGGTTTTAATTACTTAAAAACTAATAATGCTTATTCGATACTCCAAATGATTTTAAATGGAAAAGTGATAAACTACAAAGTTATAGATCTCATCAAGATCTACAACTTTTATATAAAGTTTATCTCCATCCAATATCGTTTGAAATATAGATCTGAG
AATTTTTTTTATTTATACTTTTTTTTATTAAAATATTTACAAAAATAATTTTTTGTTTCGAAAATTTACAAATCTAATTGCCTGCCGCCCTTA GAAGGGCGATTTTTAAAAATCGCCCT TCA AGGGCGGCAAGGGACCTAAAT   AAATTTTT       ATTTGT  GTTCAAACC                                                                                                                                                                     
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||   ||||||||       ||||||  |||||||||                                                                                                                                                                     A
TTAAAAAAAATAAATATGAAAAAAAATAATTTTATAAATGTTTTTATTAAAAAACAAAGCTTTTAAATGTTTAGATTAGCGGACGGCGGGAGT CTTCCCGCTAAAAATTTTTAGCGGGA GGT TCCCGCCGTTCCCTGGATTTA   TTTAAAAG       TGAACA  CGAGATATT                                                                                                                                                                     
                                                                                             C                          A   G                     -CA        GTCGTAT      AT         AAAATGTTAAATTTTAATATAATATATTTCAGTCTACTTTATTTTGAAATATAGTTTTAACATCTCGAGTTCCTCTAGATGTTGAAACATCAATCATTGAAAAAGTAAATTCTACAAAATCTATAGGTTTATAAGCAATGTTTTATATTTTGTGTAAAATTTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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