SE2650008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6976
  • Oryza sativa
  • SE2650008
  • PIF/harbinger
  • To1
  • Chr01:1131258-1131541
  • GGG
  • GGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
    ---------T         A      CTACCAATTTTTTGGTAGTGCCAAAACATAGGCAAGTTTTGGCACTACCAATTATTTGGTAGAATAAATTTGTATTCATCTTATTTGGTTTGCTACCAAAATCTAGCCAAATTGTGA
GGGC          TGTTTGGAT GGTGCC                                                                                                                     
||||          ||||||||| ||||||                                                                                                                      
CCCG          ACGATGGTT TTAAAC                                                                                                                     
    TCAAAACTTA         -      GGTATGGTTATAAAACCATCGTATTTATCATAGGTGGTAAACAAACCTAACCACGGTTGTAAAATCATTACGGGTAGAGTTTAAACCATCGTTAGATCTTGAAAGAAGTGATACTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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