SE2650009

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6977
  • Oryza sativa
  • SE2650009
  • PIF/harbinger
  • To1
  • Chr03:6881698-6881981
  • GGG
  • GGG

Secondary structure and sequence

TSD    TIR
5'



3' 
    CTTG        -AG       --   ATATGTTGGTAGTGCCAAACTCTAGGCAAGTTTTGGCACTACCAATATTTTGGTAGGGTAGAATTGTAAATGAGTGTATTTAGATTTATGCCAATTGAAAGCCAAATTTTAAA
 GGG    TTTGGTTT   TACCCTA  CCA                                                                                                                 
 |||    ||||||||   |||||||  |||                                                                                                                 T
 CCC    AAACCAAA   TGGTTTT  AAC                                                                                                                 
C   -ACA        CTA       AT   GGTATGGTTTAAAAACCACCAAATTTATCATTTACACTACTAAACCAAACTTCGGTTTAGAAACCATTACGGTTATGAGTTAAACCGTATTAAGATCTTATAAGAAGTGGTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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