SE2650010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6978
  • Oryza sativa
  • SE2650010
  • PIF/harbinger
  • To1
  • Chr01:460764-461018
  • GGG
  • GGGCATGTTTGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
    AT         GA   C                AGGGCCAAATCTTGGGCAAGTTTTGGTGCTATTAAAATTTTGGTAGAGTAGAGTTGAAAATATTTATTTGGATTGAAGCCAAAATTTGCCTA
GGGC  GTTTGGATT  TGC CTACCAAAATTTTGGT                                                                                            
||||  |||||||||  ||| ||||||||||||||||                                                                                             
CCCG  TAAATCTAA  CGA TGGGATGGTTTTAAAC                                                                                            
    GT         --   -                AGGATGGTTTTAAAACCATCCCATCGTTTGGTTTGTGGAGATGATGAGATGGTTACGATATTTAAACCGAAACGGATACTTGAACAGAGAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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