Plant MITE

SE2650011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6979
Oryza sativa
SE2650011
PIF/harbinger
To1
Chr03:14679668-14679951
GGG
GGGCCGTTTTGGTTT

Secondary structure and sequence

TSD TIR

5'

3'

    CGT        GATGCCAAAAACATACC           TT G  ---    GA     TT   TGTTAG  -   ATTGAGACTAAATATTTGGTAGTGCCCCTAAAATATTTGGTCATATTCTAGAAGTTTCTTCACTATGCTATAAGAATTT
GGGC   TTTGGTTT                 CTACCAATTTA  G CA   AATT  ATAGT  GTG      TT TGG                                                                               
||||   ||||||||                 |||||||||||  | ||   ||||  |||||  |||      || |||                                                                                
CCCG   AAACCAAG                 AAATGGGATGG  T TA   AACC  ATCAC  GGT      TT AGA                                                                               
    AAC        -----------------           -- -  AGT    --     --   ------  C   TCCTTTTAAAACCGTGATGGTTTTATAACCATCCCATTTTAATAAATCGATTGTAAACCTAACGATGGTTAAATTTCGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650011

GGGCCGTTTTGGTTTGATGCCAAAAACATACCCTACCAATTTATTGGCAAATTGAATAGTTTGTGTGTTAGTTTGGATTGAGACTAAATATTTGGTAGTGCCCCTAAAATATTTGGTCATATTCTAGAAGTTTCTTCACTATGCTATAAGAATTTGGCTTTAAATTGGTAGCAATCCAAATGTTAGCTAAATAATTTTACCCTACCAATATTTTGGTAGTGCCAAAATTTTCCTAGACTTTGGCACTACCAATGAATTGGTAGGGTAAAGAACCAAACAAGCCC

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