SE2650012

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6980
  • Oryza sativa
  • SE2650012
  • PIF/harbinger
  • To1
  • Chr12:25524438-25524700
  • GGG
  • GGGCTTGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
     TG     --TTCAA     -  -      T     TAGTGCCAAAACCTAGGCAAGTTTTGGTACTACCAATTTTTTGGTAGGGTAGAGTTGTATTTGGTTTGAGGCCAATTTAGAACCAAGCATTGAG
GGGCT  TTTGG       TACCC TA CCAAAA GTTGG                                                                                              
|||||  |||||       ||||| || |||||| |||||                                                                                               
CCCGA  AAACC       GGTTT TG ACGGGA TGGTT                                                                                              
     CA     TAATCAC     T  C      -     ATGAAACCATCAAACTTGTCACATAGACCACTAAAACCAAACTTCGGTTTAGTAACCGTAACGGTTACGGGTTAAACTATAAAAGATATAAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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