SE2650013

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6981
  • Oryza sativa
  • SE2650013
  • PIF/harbinger
  • To1
  • Chr10:16294633-16294840
  • GGG
  • GGGCTTATTTGGTTTGATACCAATTT

Secondary structure and sequence

TSD    TIR
5'



3' 
      A         ATA       ACTA              TG  A   TCAATAGTAGCAAGTGGATGTTTGGTTTGCTACCAAATTTTACCCACCATAGT
GGGCTT TTTGGTTTG   CCAATTT    CCCTACCAAAATTT  GC ACT                                                     
|||||| |||||||||   |||||||    ||||||||||||||  || |||                                                     T
CCCGAA AAACCAAAC   GGTTAAA    GGGATGGTTTTAGA  CC ATC                                                     
      C         CTC       -AAC              -C  -   ATGGTTTTGTAACCGTTTAAAACCATGATGGTTTAATCTATCATAAGTTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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