SE2650015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6983
  • Oryza sativa
  • SE2650015
  • PIF/harbinger
  • To10
  • Chr02:722433-722694
  • GGG
  • GGGCTTATTCGATTTTGAGGAATTTGAATCCATAGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
      A    A    -     ---------     A  C            AAAG   --------   - A  AGGAATGTTTGCATACATCAATCCATAGGAATTTTTCCAACATGTTTGAGTGGATGGAAAAATTCCTA
GGGCTT TTCG TTTT GAGGA         ATTTG AT CATAGGAATAGA    GTG        CAA G AT                                                                    
|||||| |||| |||| |||||         ||||| || ||||||||||||    |||        ||| | ||                                                                    T
CCCGAA AGGC AAAA CTCTT         TAAAC TA GTATTCTAATTA    AAA        AGT A GG                                                                    
      C    -    T     TTTGTTTCG     C  A            ----   ATACTCGC   A -  TAAACAACCTAACTCCATATCCTTTTAGTTTCCTTTCAAAGGAAAGGATGTTCAACATATCTCTTTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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