SE2650016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6984
  • Oryza sativa
  • SE2650016
  • PIF/harbinger
  • To10
  • Chr10:12003660-12003922
  • GGG
  • GGCTTGTTCGGTTTAGAGGAATTTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
G  -            A      TTT   CTCAT     TAGGAAAAGTGGATGAATAGAAATGTATGCACGCATCAATTCATAGGAATTTTTCCAAAAGGTTTGAGTGGATAAAATTTTTTCTATGTTTCCTCT
 GG CTTGTTCGGTTT GAGGAA   CAA     AGGAA                                                                                                
 || |||||||||||| ||||||   |||     |||||                                                                                                 
 CC GAATAAGCCAAA TTCCTT   GTT     TCCTA                                                                                                
   A            C      TTT   -----     AACCTAGGATTCCTAATTAAGGATGTACACGGTAAGCCGAATATCCTTACTCCTTATCCTTTGGTTTCCTTAAAAAGAAAAGGTAAGTTCAACATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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