SE2650018

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6986
  • Oryza sativa
  • SE2650018
  • PIF/harbinger
  • To11
  • Chr08:26820780-26820907
  • GGC
  • GGCCTCGTTCGGTTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
     CG         AAGGGG  TA      ATTGGA A         GG  ATA          ACA
GGCCT  TTCGGTTTA      AT  GAGGGA      G GGATTGAGG  GA   ATTTCACACC   
|||||  |||||||||      ||  ||||||      | |||||||||  ||   ||||||||||    
CCGGA  AAGCCAAAT      TA  CTCCCT      C CCTAACTTC  CT   TAAGGTGTGG   
     AG         ---AAG  CA      ------ -         AA  AAA          ATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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