Plant MITE

SE2650019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6987
Oryza sativa
SE2650019
PIF/harbinger
To12
Chr04:25127167-25127373
GGG
GGGCCATTTTGGTTTGG

Secondary structure and sequence

TSD TIR

5'

3'

    CAT          TGCCAATTCTT          TTCT        T      ----A      G           GATTGGAGACAAATTTTGCCAAATCAATAG
GGGC   TTTGGTTTGG           GCCCTACCAA    TTGGTAGT TTGAAT     GTACAT TTAGCATTTTG                              
||||   ||||||||||           ||||||||||    |||||||| ||||||     |||||| |||||||||||                              A
CCCG   AAACCAAACT           TGGGATGGTT    AACCATCA GGTTTG     CGTGTA AATCGTGATGG                              
    AAC          ----------T          TTAT        T      GAACC      A           TTTAAAAAATATCATGTCTAAACCGAGGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650019

GGGCCATTTTGGTTTGGTGCCAATTCTTGCCCTACCAATTCTTTGGTAGTTTTGAATAGTACATGTTAGCATTTTGGATTGGAGACAAATTTTGCCAAATCAATAGAGTGGAGCCAAATCTGTACTATAAAAAATTTGGTAGTGCTAAAATGTGCCCAAGGTTTGGTACTACCAATATTTTGGTAGGGTTTCAAACCAAACAAGCCC

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