SE2650020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6988
  • Oryza sativa
  • SE2650020
  • PIF/harbinger
  • To12
  • Chr02:20669901-20670097
  • GGG
  • GGG

Secondary structure and sequence

TSD    TIR
5'



3'
   CATG     A  G    CAA    T  C  ---  C ATTATTTGGTAGTTTTGAATAGTACTTGTTAGCTATTTGGATTGAGGCCAAATCTTACAAAT
GGG    TTTGG TT AAGC   TTCT GC CT   AT A                                                              
|||    ||||| || ||||   |||| || ||   || |                                                              T
CCC    AAACC AA TTCG   GATG GG TT   AC C                                                              
   AACA     A  A    --A    -  -  AAA  - ATTACGGTCTAGAACCCGTCCAAAACCATGATGTTTTTAAAAAAAACAAAGATTGAGATAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End