Plant MITE

SE2650024

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6992
Oryza sativa
SE2650024
PIF/harbinger
To14
Chr01:27967968-27968217
GAG
GAGCAAGTTTAATAATAAAGCCAACAATGAGTTTAT

Secondary structure and sequence

TSD TIR

5'

3'

        T     A  ------        A          ---------------      TCTTAAGTTAACATGTATAGTAAATGGGCTATAAGGTTACCTCTTTTTTTTTTCTCCTCCTCTCTCTATCTC
GAGCAAGT TAATA TA      AAGCCAAC ATGAGTTTAT               AACTTA                                                                        
|||||||| ||||| ||      |||||||| ||||||||||               ||||||                                                                        T
CTCGTTCA ATTAT AT      TTCGGTTG TATTCGAATA               AAACTT                                                                        
        T     C  CCGATA        A          CACCTCCTTTCTCTT      TTTACCTCTCCCCACCGAACATTCTCGATCGATAAGTGTATAAAGTTTTATTTATGTAATTTATGTATCCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650024

GAGCAAGTTTAATAATAAAGCCAACAATGAGTTTATAACTTATCTTAAGTTAACATGTATAGTAAATGGGCTATAAGGTTACCTCTTTTTTTTTTCTCCTCCTCTCTCTATCTCTCACCTATGTATTTAATGTATTTATTTTGAAATATGTGAATAGCTAGCTCTTACAAGCCACCCCTCTCCATTTTTCAAATTCTCTTTCCTCCACATAAGCTTATAGTTGGCTTATAGCCTACTATTATACTTGCTC

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