Plant MITE

SE2650025

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6993
Oryza sativa
SE2650025
PIF/harbinger
To15
Chr12:1752579-1752878
GGG
GGGCAAGTACTATGATG

Secondary structure and sequence

TSD TIR

5'

3'

        AC       ---------      -G    --  C   AAAAATATCATGTATGATTGGATGATGAGGTGGAAGTAATAATTGAGGAAAGAGAAGGTGAGCCCCCTATCATGCAAGGGGCAACCTCCACACAAACCCCAAGAAAAAGA
GGGCAAGT  TATGATG         CTTAAT  TGTT  GC TCT                                                                                                              
||||||||  |||||||         ||||||  ||||  || |||                                                                                                              A
CCCGTTCA  ATATTAT         CAGTGT  ATTA  AT AGG                                                                                                              
        AA       CCCTATCAA      AG    AA  -   TACATTCTATTCTCCACTATATATATTATGTGGTATAGATGTGGTGGAGATAATAATATTGGGTTTATTAAAATAAAATAAACAAACAGGTTAGGGGAGAAAGAAAGTAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650025

GGGCAAGTACTATGATGCTTAATGTGTTGCCTCTAAAAATATCATGTATGATTGGATGATGAGGTGGAAGTAATAATTGAGGAAAGAGAAGGTGAGCCCCCTATCATGCAAGGGGCAACCTCCACACAAACCCCAAGAAAAAGAAGATGAAAGAAAGAGGGGATTGGACAAACAAATAAAATAAAATTATTTGGGTTATAATAATAGAGGTGGTGTAGATATGGTGTATTATATATATCACCTCTTATCTTACATGGATAAAATTAGATGTGACAACTATCCCTATTATAAAACTTGCCC

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