SE2650026

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6994
  • Oryza sativa
  • SE2650026
  • PIF/harbinger
  • To15
  • Chr01:4594102-4594373
  • GGG
  • GGGCAAGTGCTATGGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                     --------   CTAC  ------   -   AATTTATCTATTTTATTCACTCATTAACTAAGAGGCAGCTCATACAATGTATCACCTCTAGTACATAAATATCAATATCTCTAATACTCTCATA
GGGCAAGTGCTATGGTGGATG        TGA    TA      CCT CTA                                                                                              
|||||||||||||||||||||        |||    ||      ||| |||                                                                                              C
CCCGTTCATGATATTACGAGG        GGG    GA      TGG GTA                                                                                              
                     TATACAAC   ----  TTTTTA   T   AAATAACTTACTACTCCACCTCCTCTATTCACTCCTCTCTCTACTACTCAGTGGAGATTTAGTTCTCCGTTGGAGGTGTGTTTAAAATTTTTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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