Plant MITE

SE2650027

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6995
Oryza sativa
SE2650027
PIF/harbinger
To16
Chr05:10760650-10760877
GGC
GGCC

Secondary structure and sequence

TSD TIR

5'

3'

     ----          G     G CC  - CT     TTTTCCCAAAAGCTGCTTCTGCTAGAAGCTGCCCCAAACAGTCCACAGCTTCTGAGAATCTGTAGTTACATATTCTGAAA
 GGCC    CTGTTTGGGG AGCTT T  CA G  GTAGC                                                                                
 ||||    |||||||||| ||||| |  || |  |||||                                                                                 
 CCGG    ACCTACTCGA AATTA A  GA T  CTTCG                                                                                
C    ACAA          -     - --  C --     TCAACAAACCATCGATCGAAGACTCTTAGACCTTTTCGAGATTTTGGGTCGAAGAGGTCGAAGATCGAAGAATCAAGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650027

GGCCCTGTTTGGGGGAGCTTGTCCCAGCTGTAGCTTTTCCCAAAAGCTGCTTCTGCTAGAAGCTGCCCCAAACAGTCCACAGCTTCTGAGAATCTGTAGTTACATATTCTGAAAAATGAACTAAGAAGCTAGAAGCTGGAGAAGCTGGGTTTTAGAGCTTTTCCAGATTCTCAGAAGCTAGCTACCAAACAACTGCTTCTCAGAATTAAAGCTCATCCAAACAGGCCC

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