SE2650028

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6996
  • Oryza sativa
  • SE2650028
  • PIF/harbinger
  • To16
  • Chr03:30909050-30909268
  • GGG
  • GGGCCTGTTTGGGGGAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                    TT     CAGCAGCTTATCCCGGAATCAAAAACTCCCCCAAACAGCCTAACTTTTGGTCTAGATTCTGAGAAGCTGTAGATATAGAATCC
GGGCCTGTTTGGGGGAGCTT  AGCTG                                                                                   
||||||||||||||||||||  |||||                                                                                    
CCCGGATAAATCCCCTCGAA  TTTAA                                                                                   
                    -T     GACTCTTCGTTGACCAACCATCGGTCGAAGACTCTTAGATCTTTTCGACCCAAAAGGTCGAAGACCGAAGATCAAGTAAAAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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