Plant MITE

SE2650029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6997
Oryza sativa
SE2650029
PIF/harbinger
To17
Chr03:35862085-35862286
GGG
GGGTTTGTTCAGATTGTAGCCA

Secondary structure and sequence

TSD TIR

5'

3'

         C GA   TA    AAATA    TTACC       ------AGCAA        -------    AGCAAGATGATAATATTGTCAAAATTTTGGCAGGAT
GGGTTTGTT A  TTG  GCCA     AACC     AAATTTT           TGCCAAAA       TTTT                                    
||||||||| |  |||  ||||     ||||     |||||||           ||||||||       ||||                                     
CCCGGACAA T  AAC  CGGT     TTGG     TTTAAAA           AACGGTTT       GTTG                                    
         A GA   TA    AAAAG    ---TA       AAAACCATTTC        TTTTACA    CAAATCAAACAACGATTTAAACCGTTTAGTATTCTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650029

GGGTTTGTTCAGATTGTAGCCAAAATAAACCTTACCAAATTTTAGCAATGCCAAAATTTTAGCAAGATGATAATATTGTCAAAATTTTGGCAGGATTTCTTATGATTTGCCAAATTTAGCAACAAACTAAACGTTGACATTTTTTTGGCAACTTTACCAAAAAAAATTTATGGTTGAAAATGGCATCAAAGTAAACAGGCCC

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