Plant MITE

SE2650030

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6998
Oryza sativa
SE2650030
PIF/harbinger
To17
Chr11:12750804-12751015
GGG
GGGCCTGTTCACTTTGAT

Secondary structure and sequence

TSD TIR

5'

3'

                  ---     -   ----   - C   --    ATTTTGGTAAAGTTGCTAAAAAAGTGGCTATATTTAGTTTGCTGTTAAATTTTGGTAACTATA
GGGCCTGTTCACTTTGAT   GCCAT TTT    CAA C TTA  CCAA                                                               
||||||||||||||||||   ||||| |||    ||| | |||  ||||                                                                
CCCGGACAAGTGAAACTA   TTTTT GGA    TTT A AAC  TAAC                                                               
                  TTT     T   ATAA   T -   CG    GGTTTTAAAACCGTTGATACGGTTTTAAAACCGTTGAATAGTTTTAAAAACGTCTTAAAGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650030

GGGCCTGTTCACTTTGATGCCATTTTCAACCTTACCAAATTTTGGTAAAGTTGCTAAAAAAGTGGCTATATTTAGTTTGCTGTTAAATTTTGGTAACTATATAAGAAATTCTGCAAAAATTTTGATAAGTTGCCAAAATTTTGGCATAGTTGCCAAAATTTTGGCAATGCCAAATTTTAATAAGGTTTTTTTTTATCAAAGTGAACAGGCCC

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