SE2650031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6999
  • Oryza sativa
  • SE2650031
  • PIF/harbinger
  • To17
  • Chr11:24462325-24462549
  • GGG
  • GGGCTGTTCAGATTGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
G   -               TCAAAA G   ---       AAATTTGACAACGCCAAAATTTTAGCAAATTGATAATATTACCAAAATTTTGGTAGAATTGGCTTAATAATGTT
 GGG CTGTTCAGATTGATG      T AAC   CTTACCA                                                                          
 ||| |||||||||||||||      | |||   |||||||                                                                           
 CCC GACAAGTCTAACTAC      A TTG   TAATAAT                                                                          
    A               TATAAA G   ATA       AAACTATTTTAATTATTAATACACTGATGTAAATCAAAGAATGGTTTATAACCGTTACACTTATCTTAAAACCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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