SE2650032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7000
  • Oryza sativa
  • SE2650032
  • PIF/harbinger
  • To17
  • Chr11:746958-747334
  • GGG
  • GGGCAAGTTTGGTTTGAGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A           A    AAAAC  A    AC   TAT       AAG  ACAATTTAGCATGGCCAATATTTGACAAGGCCAAATTGTGTTTGGTTAAGGGCCAAAACTAACCTTGCCAATTTTTGGCTAAACCAGGTTTGGTTTGGTGCCAACTTTTGTGTGCAGCGTGGAATACATATGGTCGATGTGC
GGGC AGTTTGGTTTG GGCC     GG CCTT  CAA   TTGGCCA   GT                                                                                                                                              
|||| ||||||||||| ||||     || ||||  |||   |||||||   ||                                                                                                                                               
CCCG TCAAACCAAGT CCGG     AT ATAA  ACC   GAATGGT   AA                                                                                                                                              
    G           A    -----  -    --   ---       --T  ATACCCTGTGTATTTGTCATCCTTGTGTTTAAACCAAACCTAGGTTTATAGCCGGCCGGACTTCTCTTTCTTAGCCATTGCAGTAACTACCCTCGGCTTCACGCCCGAACTTTAAACTTGAGGATGCGTCCGAAACCGCCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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