SE2650033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7001
  • Oryza sativa
  • SE2650033
  • PIF/harbinger
  • To18
  • Chr10:16330183-16330426
  • GAG
  • GAGCAAGTTCAATAGTATAGCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
     A  TC       ------T     ACTACTA     -------------  TTCATCTATGCCCAATCTAATAGCTCATTCATACAATAGTTACATACTACACTATTAATACCTAGTCCCACCTGTCATA
GAGCA GT  AATAGTA       AGCCA       GCTCC             AA                                                                               
||||| ||  |||||||       |||||       |||||             ||                                                                                
CTCGT CA  TTATCGT       TCGGT       CGACG             CT                                                                               
     C  TA       CTGATAT     -------     TTTGTATAAAATT  TCTATTTAGTCCTCTCTCTTCTCGTCGCCTGATGTCTAAACATTGGTCGACATCGTGCCTGAGGTTCTGCGTCACACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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