Plant MITE

SE2650034

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7002
Oryza sativa
SE2650034
PIF/harbinger
To18
Chr05:27593747-27593998
GAG
GAGCAAGGTCAATAGTA

Secondary structure and sequence

TSD TIR

5'

3'

     A   -        TAGCAACT       C   AA   C   ----------------------------   -  ATCTAATAGCTCATTCATACAATAGTTAACTATAAAAATATACTACATCATTAATACACGGT
GAGCA GGT CAATAGTA        ACTGGCT TAA  CAT TAT                            AGC TA                                                              
||||| ||| ||||||||        ||||||| |||  ||| |||                            ||| ||                                                               
CTCGT CCA GTTATCGT        TGGCCGA ATT  GTA ATA                            TCG CC                                                              
     -   T        CCAATATT       C   -G   T   GCTCTTCTTTTCTCTTCTCTCTCTTCTT   C  GATGTCTAAACATCGGCCGACGTTGTGCCTGAGGTTTTACAATATACACATACTCTCCACCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650034

GAGCAAGGTCAATAGTATAGCAACTACTGGCTCTAAAACATCTATAGCTAATCTAATAGCTCATTCATACAATAGTTAACTATAAAAATATACTACATCATTAATACACGGTCCCACCTCTCATACACATATAACATTTTGGAGTCCGTGTTGCAGCCGGCTACAAATCTGTAGCCCGCTTTCTTCTCTCTCTTCTCTTTTCTTCTCGATATATGGTTACAGCCGGTTTATAACCTGCTATTGTACCTGCTC

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