SE2650035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7003
  • Oryza sativa
  • SE2650035
  • PIF/harbinger
  • To19
  • Chr12:3528857-3529349
  • GGG
  • GGGTGTGTTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
              --      ATATCTCTGGATGGGAGATGGCGATCCAGTTTTTGAGTGTGTTTGGTTGGTGGGCGAGGGAGGATAGGGCGGCCCAAAGAGGGAATATTCCACGAAGATGCTGGATGAGTGTATCCGGCCAAATTGACCGGATGAGGATATCCACCTTAGCTAATCTTGATAATTAGTTCTTGATTAGCAATAATTAAAGTATATTGTTGTTAATTAGTAATTAACTTGTCAAAA
GGGTGTGTTTGGTT  GGAGGG                                                                                                                                                                                                                                 
||||||||||||||  ||||||                                                                                                                                                                                                                                 T
CCCACACAAACCAA  ACCAGT                                                                                                                                                                                                                                 
              GC      TCCGATCTATCCTATACTGGTAGATATAAACCTCCCTATACCACCAGGTCAAAAAACAAACCAATCTACCTATACCGGTAGGTCAAAGAACAAACCAACCCACTTACCCTTACCTAACTTACTTTTGTTGTATAATTAATTATTATTTTATCCAATTAATAGTAATTATATCGATATCAAATATGATTAATTGTTATTTTATCTCATATATAGATTAGTTGTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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