SE2650036

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7004
  • Oryza sativa
  • SE2650036
  • PIF/harbinger
  • To19
  • Chr02:2689132-2689661
  • GGG
  • GGGTGTGTTTGGTTAGATGGATG

Secondary structure and sequence

TSD    TIR
5'



3' 
              ---------AG       AGTCTGAATG   G   GCCGCTCGATTTTTTGTAGTGTTTGGTTAAATGGCAGGGTGGATGGGGAGGCCCGGAATAGGGAATATTCCCTCAATATGCTGGATGAGTGCATCCGGCCGATTTGGCTGGATGAAGCCATCCAGTTTTGGACTGGGTGATGTGTCCTATTCTAATTGGCTGTGGTTGGTTTGATTTCCTGTTAAGCAACCTCCAAATGATTTTTTCTCCTAAACCGTTTATCTA
GGGTGTGTTTGGTT           ATGGATG          GGA ATG                                                                                                                                                                                                                                 
||||||||||||||           |||||||          ||| |||                                                                                                                                                                                                                                  
CCCACACAAACCAA           TACCTAC          TAT ACC                                                                                                                                                                                                                                 
              GTAACAATACG       --------CC   -   AGTAGGTATAAATCAACCTATACCGCTAAGTTAAAAAACAAACCAAACATACCTATACCGCTAGGTTAAAGAACAAACCAACCTCTCTATATCGTACCTACCTTTTTCGGTTTTCAATCACCCGGATAAACAGTATATACAAAAAAAATAGTTTTATATTATTAGGCTCTAGAACAAAATTTCTAAATTAATATTGTTTACATTACCACATTGGTTTAGTATTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3