SE2650037

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7005
  • Oryza sativa
  • SE2650037
  • PIF/harbinger
  • To2
  • Chr02:29443763-29444001
  • GGC
  • GGCTATGTTCTTTTCTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
    A     T       -   TC   ----  TTCAACTTCCTCGTTTTCTGTTAGCATGTTTTTTAAACTATTAAATGCTGTGTTTTTATAAAAGTTTTCTATATAGGAGTTGTTTAAAAA
GGCT TGTTC TTTCTTC AAC  AAA    AC                                                                                          
|||| ||||| ||||||| |||  |||    ||                                                                                           
CCGA GCAAG AAAGAAG CAA  ACC    AC                                                                                          
    A     C       A   --   ATCA  TAAAAGACGTGTGCGGTTTGCTCTTTCGAGTAATCATGTACTAATTAATTCAAAATTGATAATATTTGAACTTTTTACCAAAAGAAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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