SE2650038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7006
  • Oryza sativa
  • SE2650038
  • PIF/harbinger
  • To2
  • Chr09:10210031-10210274
  • GGC
  • GGCTGTGTTCGTTTGGACGTTTTCCAGCGCGCTACAGTG

Secondary structure and sequence

TSD    TIR
5'



3' 
                         -              TTT   CCCCGCGCACGCTTTTCAAACTACTACACGGTGTACTTTTTTGCAAAAAGTTTCTATACAAAAGTTGCTTAAAAAAAT
GGCTGTGTTCGTTTGGACGTTTTCC AGCGCGCTACAGTG   TGC                                                                              
||||||||||||||||||||||||| ||||||||||||||   |||                                                                               
CCGACACAAGCAAACCTGCAAAAGG TCGCGCGATGTCAT   TGT                                                                              
                         G              ---   GCCTTTTGCCTTGCCAAGTAATTGTGCACTAATTAATTCATAATCGATTAAAAAAAAAAAGTTTTTACCTAATTAAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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