Plant MITE

SE2650039

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7007
Oryza sativa
SE2650039
PIF/harbinger
To2
Chr08:19268200-19268442
GGC
G

Secondary structure and sequence

TSD TIR

5'

3'

   CTT   T   TC ----   C   TTGA -------------------   GAAAAGCATCTCGTTTTCCGCGCGCACGCTTCCCAAACTACTAAACGGTGTGTTTTTTATAAAAAAATTCTATAGGAAAATTGCT
 GG   CGT CGT  C    GGG GAT    G                   AGA                                                                                     
 ||   ||| |||  |    ||| |||    |                   |||                                                                                      
 CC   ACA CAA  A    TAT TCC    T                   TAT                                                                                     
C  ---   -   -- CTCT   -   ---- CTAACCCCTCTAACCCTTC   GCGTTTTGCTCCACTCGGTAATCGTGTACTAATTAACTAATAATTGATAAAATTTGAAGTTTTTACCTAATTATACTAAAAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650039

GGCTTCGTTCGTTCCGGGCGATTTGAGAGAGAAAAGCATCTCGTTTTCCGCGCGCACGCTTCCCAAACTACTAAACGGTGTGTTTTTTATAAAAAAATTCTATAGGAAAATTGCTTTAAAAAATCATATTAATCCATTTTTGAAGTTTAAAATAGTTAATAATCAATTAATCATGTGCTAATGGCTCACCTCGTTTTGCGTATCTTCCCAATCTCCCCAATCTCCTTATTCTCAAACACACCC

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