SE2650040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7008
  • Oryza sativa
  • SE2650040
  • PIF/harbinger
  • To2
  • Chr06:25343963-25344201
  • GGC
  • GGCTCTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
          -----------GTTTCCT      CCCAACTCCCCCATCTCATTTTCCGCGCGTACGCTTTTCAAACTGCTAAACGGTGTGTTTTTTGCAAAAAGTTTATATACGAAAGTTGCTT
GGCTCTGTTC                  GGAGTT                                                                                           
||||||||||                  ||||||                                                                                            
CCGAGACAAG                  GGGTAG                                                                                           
          AAAACCAACTCAACCCTT      GGAGGCCATGCCTTTTGCTTCGTCAGGTAATCGTGCACTAATTAATTAATAAACGATTAAAAAAATTTTTTTACCTAGTTATATTAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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