SE2650041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7009
  • Oryza sativa
  • SE2650041
  • PIF/harbinger
  • To2
  • Chr04:34148527-34148761
  • GGC
  • GGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
    C    ---- GATCA  CGTTTGGCAGATAGATTTTTGACGCAAAACGAGAAATCTCATTAGCACATGATTAATTAAGTATTAAGTATTATAAATTTCAAAAATGAATTTATTTGCTT
GGCC CGTT    T     TC                                                                                                     
|||| ||||    |     ||                                                                                                      
CCGG TCAA    A     AA                                                                                                     
    A    GATA -----  AGTTGAAGTTTGAAGTTGAAAGAGCAAAAGGCAATCGTGCGAAAAGTTTGGCAATTTACCACGCAAAAAATTTTTTCAAAAATATGTATTCAACAAATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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