Plant MITE

SE2650042

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7010
Oryza sativa
SE2650042
PIF/harbinger
To2
Chr10:12980238-12980476
GGC
GGCTGTGTTCG

Secondary structure and sequence

TSD TIR

5'

3'

           GACGTCCATT        CTATCTTCCTCGTTTTCC     -- A  C  TT AAACTGCTAAACGGTGTGTTTTTTTGCAAAAAGTTTCTATACAAAAGTTGCTTAAAAAAAT
GGCTGTGTTCG          TTCCCAAC                  GCGCG  C CG TT  C                                                             
|||||||||||          ||||||||                  |||||  | || ||  |                                                             C
CCGACACAAGC          AAGGGTTG                  GTGCC  T TG CC  T                                                             
           GATACCCAAC        ------AACCTTGTCATC     TT -  -  -- CGCTAGGTAATCGCGCACTAATTAATTCATAATCGAAAAAAAAAGTTTTTACCTAATTAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650042

GGCTGTGTTCGGACGTCCATTTTCCCAACCTATCTTCCTCGTTTTCCGCGCGCACGCTTTTCAAACTGCTAAACGGTGTGTTTTTTTGCAAAAAGTTTCTATACAAAAGTTGCTTAAAAAAATCAAATTAATCCATTTTTGAAAAAAAAAGCTAATACTTAATTAATCACGCGCTAATGGATCGCTCCGTTTTCCGTGCTACTGTTCCAAGTTGGGAACAACCCATAGCGAACACAGCC

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