SE2650043

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7011
  • Oryza sativa
  • SE2650043
  • PIF/harbinger
  • To2
  • Chr05:28123777-28124009
  • GGC
  • GGCTGTGTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
          TTCTCCCATTTTCCT     -A     CTCGTTTT   C       CTTTTC    --T   AAAC    TGATTTATGCAAAAACTTTCTATATGAAAGTTGTTATAAAAAATCATA
GGCTGTGTTC               AACCC  CCTCT        CCG GCGCACA      AAAC   GCT    GGTG                                                
||||||||||               |||||  |||||        ||| |||||||      ||||   |||    ||||                                                T
CCGACACAAG               TTGGG  GGAGG        GGC CGTGTGT      TTTG   CGA    GTAT                                                
          --TCCTCCACAACCC     GA     --------   -       ------    CTT   ----    AATAACGTACTAATTAATTCATAATTGAAAAAAAACTTTTTACCTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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