SE2650044

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7012
  • Oryza sativa
  • SE2650044
  • PIF/harbinger
  • To2
  • Chr06:3413649-3413887
  • GGC
  • GGCCTAGTTCTTTTCTTCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
   CTA       T      CTCCAAATTTCAACTTCCT      CC  TA      TTTTC     GTT AATGATACTTTTTTTAAAAAAAATCTATATAGAAGTTGTTTTAAAAATTCAAATAAA
GGC   GTTCTTT CTTCAA                   CATTTT  GT  GCACGC     AAACT   A                                                         
|||   ||||||| ||||||                   ||||||  ||  ||||||     |||||   |                                                          
CCG   CAAGAAA GGAGTT                   GTAAAA  CG  CGTGCG     TTGCT   C                                                         
   ACA       C      ---------CAAACTCTCT      AT  --      ---CT     --- TTTCGAGTAATTGTGTACTAATTAATTCATAACTATTAATATTTGAATTTTTTACCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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