Plant MITE

SE2650045

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7013
Oryza sativa
SE2650045
PIF/harbinger
To2
Chr03:10459156-10459395
GGC
GGCTGCGTTCGATC

Secondary structure and sequence

TSD TIR

5'

3'

    GC    -GA  ACCTAA   --  ---   AAGAATTTTAGCGCATACAAAACGAGAAAACTCATTAGCATATGATTAATTAAGTATTAATAATTATAAACTTGATAAATGGATTTATTT
GGCT  GTTC   TC      TTT  GT   AGC                                                                                          
||||  ||||   ||      |||  ||   |||                                                                                          G
CCGG  TAAG   AG      TTG  GT   AAG                                                                                          
    GT    AAA  ---AAG   AG  TTG   TTGAAAGAACAAAAGGCAATCGTGCGAAAAGTTTGACAATTTACTACACAAAAGAAATTTTTTTTAGATATATCTTCAACAAATTTTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650045

GGCTGCGTTCGATCACCTAATTTGTAGCAAGAATTTTAGCGCATACAAAACGAGAAAACTCATTAGCATATGATTAATTAAGTATTAATAATTATAAACTTGATAAATGGATTTATTTGAATTTTTAAACAACTTCTATATAGATTTTTTTTAAAGAAAACACATCATTTAACAGTTTGAAAAGCGTGCTAACGGAAAACAAGAAAGTTGAAGTTTGGAGTTGAAGAAAAGAATTGGGCC

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