Plant MITE

SE2650047

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_7015
Oryza sativa
SE2650047
PIF/harbinger
To20
Chr01:19692125-19692430
GGC
GGCCTTATTCGTTTTGAAGGATT

Secondary structure and sequence

TSD TIR

5'

3'

    C       T   GA      -------------------C        -- ATCTCAATTCCTTTGGAATAAGCACTATTCATGCATTCGGTTTGTAGGATTCAAAAGAAAATTTTCCATAGGAACACTATGCCAATCCTCCAAAAATCCTCCAAAATGT
 GGC TTATTCG TTT  AGGATT                    CTAAAGGA  A                                                                                                             
 ||| ||||||| |||  ||||||                    ||||||||  |                                                                                                             A
 CCG AATAAGC AAG  TCCTAA                    TTTTGCAT  T                                                                                                             
C   -       C   TG      AAGTTTAGTGTCCTTATCCT        CC TATTATATCCTTACGTGCACGCTTTGTTTCCTAACCTTGTGTCCTTAAAAAGGATGTGACTCGATTTATTTTCTCCTATCTCACCTACAAAAGTAAGGATATCTTAATC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2650047

GGCCTTATTCGTTTTGAAGGATTCCTAAAGGAAATCTCAATTCCTTTGGAATAAGCACTATTCATGCATTCGGTTTGTAGGATTCAAAAGAAAATTTTCCATAGGAACACTATGCCAATCCTCCAAAAATCCTCCAAAATGTACTAATTCTATAGGAATGAAAACATCCACTCTATCCTCTTTTATTTAGCTCAGTGTAGGAAAAATTCCTGTGTTCCAATCCTTTGTTTCGCACGTGCATTCCTATATTATTCCTACGTTTTTCCTATTCCTGTGATTTGAAAATCCTGTGAACCGAATAAGCCC

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