SE2650048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_7016
  • Oryza sativa
  • SE2650048
  • PIF/harbinger
  • To20
  • Chr03:7174444-7174883
  • GGG
  • GGGCTTGTTCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
             A  G    -    CACATGATTTTTGTAAGATTGGCAAATCCTTTGGATTTGATGCATTCGGTTCATAAGAATCACGTGTAGGAATTTTGTAGGAATACTATAGCAACCCTGTGAAAACGTAGGAATTTCATAGGATTCTGAACATCCACTCACATCTCTTTTTTTTTCATTAGCTACCACAGGGTACATGCTAATCACGTTGGATTG
GGGCTTGTTCGGA TG AGGG ATTA                                                                                                                                                                                                   
||||||||||||| || |||| ||||                                                                                                                                                                                                    
CCCGAACAAGCCT GT GTAT ATCC                                                                                                                                                                                                   
             A  -    T    TTTTTATATCCTTATTTTTTTTGTGTCCTTATTATATCCTAACGAATACATTCTACATCCTAACTTTTTGCTTCCTTAAACTACCATTCTTCGTAAGCCTTATGTCCTTATATATTTGGCATCCTTAAAAGGTTAATTATAACTAGAGTATATAATATCATATTAATTTGTTATTTTATAATCAAAGGTAGATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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